Search results for "web tool"
showing 6 items of 6 documents
Www-sovelluskehitys Vaadin-kehyksellä
2012
Tämä tutkielma käsittelee suomalaista WWW-sovelluskehystä Vaadinta. Se on palvelinpohjainen Java-kehys rikkaiden WWW-sovellusten kehittämiseen. Tutkielmassa esitellään myös WWW-kehyksiä yleisesti sekä WWW-kehysten yleensä käyttämä MVC-arkkitehtuuri. Lisäksi esitellään myös Vaatimen käyttämät tekniikat: AJAX, UIDL, JSON ja DOM sekä kuinka Vaadin niitä käyttää. Vaatimesta käydään läpi käyttöliittymäkomponentit, tapahtumien käsittely, tietomalli ja ulkoasun muokkaus. Lopuksi esitellään Vaatimen käyttöä esimerkkisovelluksen avulla.
Visualizing Human Protein‐Protein Interactions and Subcellular Localizations on Cell Images Through CellMap
2020
Visualizing protein data remains a challenging and stimulating task. Useful and intuitive visualization tools may help advance biomolecular and medical research; unintuitive tools may bar important breakthroughs. This protocol describes two use cases for the CellMap (http://cellmap.protein.properties) web tool. The tool allows researchers to visualize human protein-protein interaction data constrained by protein subcellular localizations. In the simplest form, proteins are visualized on cell images that also show protein-protein interactions (PPIs) through lines (edges) connecting the proteins across the compartments. At a glance, this simultaneously highlights spatial constraints that prot…
Web Tool for Path Analysis in Wireless Sensor Networks to Improve Their Performance
2018
Wireless Sensor Networks (WSNs) are based on tiny autonomous devices, usually named motes or nodes, and are used in many monitoring applications, such as environment, habitat, precision horticulture, etc. These motes are power-limited and most energy is wasted through the communication process when exchanging data packets. Because these motes are quite simple, with low power transmission and simple antennas, these networks usually run multihop routing protocols in order to forward packets between one mote to the sink, or the collector node, using the other motes as relaying motes. Basically, these routing protocols try to find out new routes within these wireless network, optimizing differe…
DiseaseLinc: Disease Enrichment Analysis of Sets of Differentially Expressed LincRNAs
2021
Long intergenic non-coding RNAs (LincRNAs) are long RNAs that do not encode proteins. Functional evidence is lacking for most of them. Their biogenesis is not well-known, but it is thought that many lincRNAs originate from genomic duplication of coding material, resulting in pseudogenes, gene copies that lose their original function and can accumulate mutations. While most pseudogenes eventually stop producing a transcript and become erased by mutations, many of these pseudogene-based lincRNAs keep similarity to the parental gene from which they originated, possibly for functional reasons. For example, they can act as decoys for miRNAs targeting the parental gene. Enrichment analysis of fun…
Eines web per a l'elaboració del Treball Final de Grau i Màster en Enginyeria Química
2014
La necessitat d'un gran volum d'informació per a l'elaboració de projectes de caràcter professional en Enginyeria Química pot esdevenir un greu problema en aquells casos en els quals el projecte ha de ser preparat pels alumnes per al seu Treball Fi de Grau o Treball Fi de Màster, ja que la consecució d'aquesta informació és complicada i implica, en moltes ocasions, una despesa econòmica important. Per resoldre aquest problema, l'objectiu d'aquest article és subministrar a l'estudiant eines web de lliure accés que li permeten tenir informació relativa a les parts del projecte que ha d'elaborar. Per a fer-ho s'ha realitzat una anàlisi dels camps en els quals l'estudiant necessita informació i…
Automated selection of homologs to track the evolutionary history of proteins
2018
Background The selection of distant homologs of a query protein under study is a usual and useful application of protein sequence databases. Such sets of homologs are often applied to investigate the function of a protein and the degree to which experimental results can be transferred from one organism to another. In particular, a variety of databases facilitates static browsing for orthologs. However, these resources have a limited power when identifying orthologs between taxonomically distant species. In addition, in some situations, for a given query protein, it is advantageous to compare the sets of orthologs from different specific organisms: this recursive step-wise search might give …